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SAMPLES (18)
mace:id
Technology # Array version
# SEVERAL # # SEVERAL
Affymetrix # HGU 133 Plus 2
Affymetrix # MGU 74 Av2
Affymetrix # MoGene V1.0st
Affymetrix # Mouse 430A
Affymetrix # Rhesus
Agilent # AGHUMAN
Agilent # AGMOUSE
Applied Biosystems # HGS V1
Applied Biosystems # HGS V2
Applied Biosystems # MGS V1
Applied Biosystems # MGS V2
Applied Biosystems # RGS V1
Genopole SXB # SXBH1
Genopole SXB # SXBH2
Genopole SXB # SXBH3
Genopole SXB # SXBM1
Genopole SXB # SXBM2
Genopole SXB # SXBM3
Illumina # HumanHT-12 V4.0
Illumina # HUMANWG6v3
Illumina # MouseWG-6 v2.0
Species
# SEVERAL
Cercocebus atys
Chlorocebus sabaeus
Homo sapiens
Macaca mulatta
Macaca Nemestrina
Mus musculus
Pan troglodytes
Rattus norvegicus
Organ
# OTHER
# SEVERAL
Adenoid
Adrenal gland
Bladder
Blood
Blood vessel
Brain
Bronchi
Cervix
Embryo
Esophagus
Gallblader
Heart
Hypotalamus
Intestine
Kidney
Larynx
Liver
Lung
Lymph node
Mammary gland
Mussle
Pancreas
Parathyroid
Penis
Pharynx
Pineal gland
Pituitary gland
Prostate
Salivary gland
Seminal vesicle
Skin
Spinal cord
Spleen
Stomach
Test
Thymus
Thyroid
Tonsil
Trachea
Ureter
Uterus
Vagina
Vas deferens
Tissue
# OTHER
# SEVERAL
Bone Marrow
Connective - Dense Irregular Tissue (Collagen)
Connective - Dense Regular Tissue (Collagen)
Connective - Dense Regular Tissue (Elastic)
Connective - Loose Tissue (Adipose)
Connective - Loose Tissue (Areolar)
Connective - Loose Tissue (Reticular)
Epithelium - Simple (Columnar)
Epithelium - Simple (Cuboidal)
Epithelium - Simple (Pseudostratified)
Epithelium - Simple (Squamous)
Epithelium - Stratified (Columnar / Cuboidal)
Epithelium - Stratified (Squamous: Keratinized)
Epithelium - Stratified (Squamous: NonKeratinized)
Fluid - Blood
Fluid - Lymph
Gland - Endocrine Glands
Gland - Exocrine Glands (Ducts and Tubules)
Muscle - Non-striated
Muscle - Striated (Cardiac)
Muscle - Striated (Skeletal)
Nervous - Nerves
Nervous - Neurons (Bipolar)
Nervous - Neurons (Multipolar)
Nervous - Neurons (Unipolar)
Nervous - Receptors
Placenta
Stem cells
Supportive - Cartilage (Elastic)
Supportive - Cartilage (Fibrocartilage)
Supportive - Cartilage (Hyaline)
Supportive - Osseous (Compact)
Supportive - Osseous (Spongey)
Physiopathology
# HEALTHY
# OTHER
# SEVERAL
apoptosis
autocrine signaling
differentiation
drug response
electric response
endocrine signaling
environemental response
homeostasis
immune response
mechanic response
necrosis
paracrine signaling
proliferation
Type
# OTHER
# SEVERAL
conditional knockout
drug stress
electric stress
environmental stress
ground state
immune stress
knockdown RNAi
knockout
mechanic stress
stable transfection
time course
transient transfection
Name
Attached file
download project data file ('.map')
Attached file (see:
ruid website
)
download project data file ('.map' RUID converted)
Attached file
download raw data files ('.zip')
Attached file
download annotation files ('.zip')
User name
François Tronche
Email
francois.tronche@gmail.com
Phone / Fax number
+33 1 44 27 60 0 / +33 1 44 27 61 5
Location
INSERM URMS 952 , CNRS UMR 7224, Université Pierre et Marie Curie (Physiopathologie des Maladies du Système Nerveux Central) - 7-9 quai Saint Bernard, Bat A, B - 75252 Paris, France
Scientific description
The etiology of addiction is multifaceted and implicates interactions between life experience and genetic background. Stress and stress-induced glucocorticoid secretion are determinant to facilitate addiction. We previously showed that genetic inactivation of glucocorticoid receptor (GR) gene in dopaminoceptive neurons impaired cocaine seeking. Here we examined the contribution of GR to the responses to opiates, a pharmacologically-distinct class of abused substances. We showed that inactivating GR within dopaminoceptive neurons substantially reduced cocaine-induced conditioned place preference and the expression of locomotor sensitization. In contrast, behavioral responses to morphine remained unchanged when GR was absent from these neurons or from dopamine cells. The dopaminoceptive mutation engendered alterations of striatal genes expression implicated in glutamatergic transmission and plasticity. Impaired molecular reactivity to cocaine was conspicuous as we observed a deficit in activation of extracellular-signal regulated kinase 1/2 and expression of the key immediate early genes c-Fos and Zif268 in mutants. Furthermore, cocaine-elicited extracellular accumbal dopamine release was markedly diminished. Mirroring the lack of effect on morphine’s behaviors, the dopaminoceptive mutation did not modify neither molecular nor neurochemical morphine’s responses. The combined behavioural and molecular approaches identified a subset of striatal neurons in which GR differently underlies psychostimulant- and opiate-induced maladaptive changes contributing to addiction.
Technical description
Tissue collection and total RNA isolation and labelling One week before dissection, animals (GRD1Cre and controls littermates) are isolated in single cages with tap water and food ad libitum. Mice are sacrificed between 10 and 11 a.m. and the striata are quickly removed and put in RNA later solution (Qiagen) on ice. Collected striata are disrupted in Qiazol reagent (Qiagen) using ultra turax (IKA-Werke??). Total RNA preparation was performed using “RNeasy lipid mini kit†(Qiagen). RNA quality and concentration were both determined by absorbance at 260 and 280 nm and by analysis using agilent bioanalyzer (Agilent). The obtained RNA presented a RIN between 8.3 and 9.1. Sample labelling and purification were done using “NanoAmp RT-IVT†kit (Applied Biosystems). Briefly, first and second strand cDNA synthesis was performed from 0.5 µg of each sample. Then, in vitro transcription was achieved. During this step, DIG labelled-UTP is incorporated to obtain labelled cRNA. Microarray Hybridization, Quality control and Analysis IVT products were then fragmented for hybridization to Applied Biosystem Mouse Genome Survey Microarray v0.2. Arrays were hybridized for 16 h at 55°C, washed, stained with ant-DIG antibodies using the “Chemioluminescence Detection kit†protocol (Applied Biosystems) and scanned in AB1700 platform. Primary image and data analysis was performed as described in (Wilhelm et al. 2008) using Applied Biosystems software in version 1.1.1. The resulting transcriptome profile data distributions (Noth et al. 2006b) were then compared to a large reference set of 500 unrelated and, biologically speaking, heterogeneous, previously acquired profiles. A similarity index calculated individually for each experiment towards the reference group was used as a quality control measure. Mean Pearson correlation coefficients for all possible inter- and intra-group combinations were determined by calculating the average correlation as a function of the individual probe by probe correlations. Weighted mean expression profiles were calculated using the inverse of the coefficient of variation (CV) as a weight with the sum of the weights being equal to unity (previously discussed in Firley et al. 2008). Subtraction profiles were calculated either between the average mutant and control profiles or in a everyone-against-everyone scheme using a mixed-distribution ANOVA (see also Wilhelm et al. 2008) to reveal statistically significant (p<0.05) changes in gene expression. Hierarchical bi-clustering was performed using average Euclidean distances calculated from the individual experiments. Correlation between qPCR and microarray data was determined using Pearson correlation coefficients. Gene ontology analysis Gene Ontology (GO) and KEGG annotations were analyzed using the Panther Protein Classification System (http://www.pantherdb.org) to identify functional annotations that were significantly enriched in the different gene sets when compared to the whole set of genes present on the ABI microarray. Note that a given gene can be assigned to different pathways or biological processes. P-values are determined using a binominal distribution and a null hypothesis of a random set of genes with identical size.
References
Pubmed : http://www.ncbi.nlm.nih.gov/pubmed/20554270
Glucocorticoid receptors in dopaminoceptive neurons, key for cocaine, are dispensable for molecular and behavioral morphine responses. Barik J, Parnaudeau S, Saint Amaux AL, Guiard BP, Golib Dzib JF, Bocquet O, Bailly A, Benecke A, Tronche F. Biol Psychiatry. 2010 Aug 1;68(3):231-9.